JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF575_chr19_43528188_43541087	0/0	g0006	6	6	0	0	0	0	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	g0007	4	4	0	0	0	0	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	g0008	4	4	0	0	0	0	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	g0009	1	1	0	0	0	0	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	g0010	1	0	1	0	0	0	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	g0011	1	1	0	0	0	0	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	g0012	1	1	0	0	0	0	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	g0013	1	0	0	1	0	0	ZNF575	chr19	43528188	43541087
ZNF575_chr19_43528188_43541087	0/0	g0014	1	1	0	0	0	0	ZNF575	chr19	43528188	43541087
ZNF576_chr19_43591595_43606157	0/1	g0001	204	46	40	87	4	26	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	1/0	g0002	93	16	12	43	8	13	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0003	57	13	17	18	5	4	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0004	37	0	0	32	1	4	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0005	6	0	4	0	0	2	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0006	6	6	0	0	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0007	6	4	2	0	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0008	3	1	1	0	0	1	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0009	1	0	0	1	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0010	1	1	0	0	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0011	1	0	1	0	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0012	1	0	0	1	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0013	1	1	0	0	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0014	1	0	0	1	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0015	1	0	0	1	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0016	1	0	1	0	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0017	1	1	0	0	0	0	ZNF576	chr19	43591595	43606157
ZNF576_chr19_43591595_43606157	0/0	g0018	1	1	0	0	0	0	ZNF576	chr19	43591595	43606157
ZNF577_chr19_51862048_51892951	0/0	g0001	41	7	5	26	2	1	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	1/1	g0002	30	1	9	13	2	3	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0003	25	0	1	22	1	1	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0004	21	0	12	0	2	7	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0005	10	1	6	0	0	3	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0006	7	0	0	7	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0007	6	0	0	6	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0008	6	0	2	1	1	2	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0009	5	0	2	3	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0010	5	0	0	0	2	3	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0011	5	0	0	5	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0012	4	3	1	0	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0013	4	0	0	4	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0014	4	0	2	0	0	2	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0015	3	0	1	0	0	2	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0016	3	1	0	0	1	1	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0017	3	0	2	0	1	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0018	3	3	0	0	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0019	3	1	2	0	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0020	3	3	0	0	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0021	3	3	0	0	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0022	3	3	0	0	0	0	ZNF577	chr19	51862048	51892951
ZNF577_chr19_51862048_51892951	0/0	g0023	3	0	0	0	1	2	ZNF577	chr19	51862048	51892951