JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTLA_chr3_112458966_112504472	0/0	g0273	1	1	0	0	0	0	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	g0274	1	1	0	0	0	0	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	g0275	1	0	1	0	0	0	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	g0276	1	1	0	0	0	0	BTLA	chr3	112458966	112504472
BTLA_chr3_112458966_112504472	0/0	g0277	1	1	0	0	0	0	BTLA	chr3	112458966	112504472
BTN1A1_chr6_26495303_26515425	0/0	g0001	68	6	11	36	4	11	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0002	61	1	13	37	1	9	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0003	60	11	24	11	6	8	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0004	52	17	5	23	1	6	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0005	39	21	2	16	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	1/0	g0006	23	4	5	11	1	1	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0007	10	8	2	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0008	7	5	2	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0009	7	0	0	7	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0010	6	1	1	1	1	2	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0011	5	4	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/1	g0012	5	0	0	3	0	1	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0013	5	0	4	0	0	1	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0014	5	0	2	0	0	3	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0015	4	1	0	3	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0016	4	0	0	4	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0017	3	3	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0018	3	3	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0019	3	0	0	0	0	3	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0020	2	0	0	2	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0021	2	0	0	2	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0022	2	0	0	0	0	2	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0023	2	0	0	2	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0024	2	2	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0025	2	0	0	2	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0026	2	0	0	2	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0027	1	0	0	1	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0028	1	0	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0029	1	0	0	0	1	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0030	1	0	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0031	1	0	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0032	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0033	1	0	0	1	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0034	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0035	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0036	1	0	0	0	0	1	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0037	1	0	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0038	1	0	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0039	1	0	0	1	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0040	1	0	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0041	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0042	1	0	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0043	1	0	1	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0044	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0045	1	0	0	1	0	0	BTN1A1	chr6	26495303	26515425