JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTN1A1_chr6_26495303_26515425	0/0	g0046	1	0	0	0	1	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0047	1	0	0	1	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0048	1	0	0	0	0	1	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0049	1	0	0	0	0	1	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0050	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0051	1	0	0	1	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0052	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0053	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0054	1	0	0	1	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0055	1	0	0	1	0	0	BTN1A1	chr6	26495303	26515425
BTN1A1_chr6_26495303_26515425	0/0	g0056	1	1	0	0	0	0	BTN1A1	chr6	26495303	26515425
BTN2A1_chr6_26452955_26474637	0/1	g0001	98	10	11	61	4	11	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0002	37	7	0	26	0	4	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0003	29	24	5	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0004	20	1	14	0	1	4	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0005	20	6	0	14	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0006	17	1	4	10	1	1	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0007	17	0	0	17	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0008	17	3	5	8	1	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0009	17	2	1	11	1	2	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0010	7	2	1	1	1	2	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0011	7	0	4	1	2	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0012	7	0	1	6	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0013	7	0	2	5	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0014	6	0	1	1	0	4	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0015	6	2	3	1	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0016	5	5	0	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0017	4	0	0	4	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0018	3	0	2	0	0	1	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0019	3	0	3	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0020	3	0	0	3	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0021	3	2	1	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0022	3	0	0	3	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0023	3	2	1	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0024	3	0	3	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0025	3	3	0	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0026	3	0	2	0	1	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0027	2	1	0	0	0	1	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0028	2	0	2	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0029	2	2	0	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0030	2	2	0	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0031	2	0	0	0	0	2	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0032	2	1	1	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0033	2	0	0	2	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0034	2	0	0	0	2	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0035	2	0	0	2	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0036	2	1	1	0	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0037	2	0	0	2	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0038	2	0	0	2	0	0	BTN2A1	chr6	26452955	26474637
BTN2A1_chr6_26452955_26474637	0/0	g0039	2	0	1	0	1	0	BTN2A1	chr6	26452955	26474637