JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF57_chr19_2895928_2923473	0/0	g0283	1	0	0	1	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0284	1	1	0	0	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0285	1	1	0	0	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0286	1	1	0	0	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0287	1	1	0	0	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0288	1	0	0	1	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0289	1	0	0	1	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0290	1	0	0	1	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0291	1	0	0	1	0	0	ZNF57	chr19	2895928	2923473
ZNF57_chr19_2895928_2923473	0/0	g0292	1	0	0	1	0	0	ZNF57	chr19	2895928	2923473
ZNF580_chr19_55636002_55648470	1/1	g0001	248	58	70	75	9	34	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0002	79	15	16	34	2	12	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0003	51	12	1	35	2	1	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0004	6	4	1	1	0	0	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0005	2	2	0	0	0	0	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0006	2	0	0	0	0	2	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0007	1	1	0	0	0	0	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0008	1	0	0	0	0	1	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0009	1	0	0	0	1	0	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0010	1	0	0	1	0	0	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0011	1	0	0	1	0	0	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0012	1	0	0	1	0	0	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0013	1	0	0	1	0	0	ZNF580	chr19	55636002	55648470
ZNF580_chr19_55636002_55648470	0/0	g0014	1	0	0	1	0	0	ZNF580	chr19	55636002	55648470
ZNF581_chr19_55638649_55650623	0/1	g0001	387	91	85	147	14	49	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	g0002	4	1	3	0	0	0	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	1/0	g0003	3	0	0	1	0	1	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	g0004	2	2	0	0	0	0	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	g0005	1	1	0	0	0	0	ZNF581	chr19	55638649	55650623
ZNF581_chr19_55638649_55650623	0/0	g0006	1	1	0	0	0	0	ZNF581	chr19	55638649	55650623
ZNF582_chr19_56377751_56398534	0/0	g0001	35	1	14	12	3	5	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0002	23	2	2	19	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0003	20	0	1	18	1	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0004	19	0	2	17	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0005	18	0	0	18	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0006	16	1	4	11	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0007	15	1	0	14	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0008	13	0	9	0	1	3	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	1/0	g0009	12	0	3	2	1	5	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0010	12	0	2	10	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0011	9	0	0	9	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0012	8	0	0	8	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0013	6	0	5	1	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0014	5	2	1	0	0	2	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0015	5	0	0	5	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0016	5	4	1	0	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0017	4	1	2	0	0	1	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0018	4	0	0	4	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0019	4	0	0	4	0	0	ZNF582	chr19	56377751	56398534
ZNF582_chr19_56377751_56398534	0/0	g0020	4	0	1	3	0	0	ZNF582	chr19	56377751	56398534