JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTN2A2_chr6_26378108_26399874	0/0	g0056	1	0	0	0	0	1	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	g0057	1	0	0	1	0	0	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	g0058	1	0	1	0	0	0	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	g0059	1	0	0	0	0	1	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	g0060	1	1	0	0	0	0	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	g0061	1	0	1	0	0	0	BTN2A2	chr6	26378108	26399874
BTN2A2_chr6_26378108_26399874	0/0	g0062	1	0	1	0	0	0	BTN2A2	chr6	26378108	26399874
BTN3A1_chr6_26397275_26420208	1/1	g0001	100	6	19	58	1	14	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0002	25	15	0	10	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0003	24	0	0	22	0	2	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0004	18	2	2	13	0	1	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0005	14	0	4	9	1	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0006	13	0	0	12	0	1	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0007	12	0	9	0	1	2	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0008	7	7	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0009	7	6	1	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0010	6	0	2	4	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0011	6	5	0	1	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0012	5	1	1	0	0	3	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0013	5	0	2	0	0	3	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0014	5	0	1	3	0	1	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0015	5	0	2	1	2	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0016	5	5	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0017	4	0	3	0	1	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0018	4	0	2	0	0	2	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0019	4	0	2	0	2	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0020	4	2	1	1	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0021	4	2	2	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0022	4	4	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0023	3	0	0	1	0	2	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0024	3	0	0	3	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0025	3	3	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0026	3	1	0	0	0	2	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0027	3	3	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0028	2	0	0	2	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0029	2	0	0	2	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0030	2	0	2	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0031	2	2	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0032	2	0	2	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0033	2	1	1	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0034	2	1	1	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0035	2	0	0	2	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0036	2	0	2	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0037	2	0	0	0	0	2	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0038	2	0	0	0	2	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0039	2	0	1	0	0	1	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0040	2	2	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0041	2	0	0	1	1	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0042	2	1	1	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0043	2	0	1	1	0	0	BTN3A1	chr6	26397275	26420208