JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTN3A1_chr6_26397275_26420208	0/0	g0094	1	1	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0095	1	1	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0096	1	0	0	0	0	1	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0097	1	1	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0098	1	1	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0099	1	0	1	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0100	1	0	1	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0101	1	0	0	1	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0102	1	1	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0103	1	1	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A1_chr6_26397275_26420208	0/0	g0104	1	1	0	0	0	0	BTN3A1	chr6	26397275	26420208
BTN3A2_chr6_26360198_26383312	0/0	g0001	28	2	4	17	1	4	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0002	16	1	0	14	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0003	13	0	5	7	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0004	11	0	9	0	0	2	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0005	6	0	0	6	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0006	6	0	0	3	0	3	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0007	6	0	6	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0008	6	0	2	2	2	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0009	6	3	3	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0010	5	3	0	2	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0011	5	0	0	5	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0012	5	0	0	5	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0013	5	1	2	2	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0014	5	2	0	3	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0015	4	1	1	0	0	2	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0016	4	0	1	0	0	3	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	1/0	g0017	4	0	0	3	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0018	4	3	0	1	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0019	4	3	0	1	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0020	4	0	1	2	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0021	4	0	0	4	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0022	3	0	0	2	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0023	3	0	0	3	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0024	3	0	2	1	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0025	3	3	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0026	3	0	2	1	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0027	3	0	0	2	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0028	3	0	1	1	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0029	2	0	0	2	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0030	2	0	0	2	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0031	2	2	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0032	2	0	1	0	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0033	2	2	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0034	2	0	0	0	0	2	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0035	2	0	0	0	1	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0036	2	1	0	1	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0037	2	0	0	2	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0038	2	0	1	1	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0039	2	0	1	1	0	0	BTN3A2	chr6	26360198	26383312