JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF597_chr16_3427414_3448504	0/0	g0102	1	1	0	0	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0103	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0104	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0105	1	1	0	0	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0106	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0107	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0108	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0109	1	0	0	0	0	1	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0110	1	0	0	0	0	1	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0111	1	0	0	0	0	1	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0112	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0113	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0114	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0115	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0116	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0117	1	1	0	0	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0118	1	0	1	0	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0119	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0120	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0121	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0122	1	0	1	0	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0123	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0124	1	0	1	0	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0125	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0126	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0127	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0128	1	0	1	0	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0129	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0130	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0131	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0132	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0133	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0134	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF597_chr16_3427414_3448504	0/0	g0135	1	0	0	1	0	0	ZNF597	chr16	3427414	3448504
ZNF599_chr19_34753073_34778215	0/1	g0001	82	3	9	52	5	12	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0002	79	19	19	30	5	6	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	1/0	g0003	48	0	11	35	0	1	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0004	41	0	9	25	2	5	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0005	19	0	0	19	0	0	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0006	15	2	0	12	0	1	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0007	11	2	4	0	3	2	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0008	8	7	1	0	0	0	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0009	7	7	0	0	0	0	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0010	7	0	1	4	0	2	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0011	6	5	1	0	0	0	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0012	5	0	0	5	0	0	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0013	4	4	0	0	0	0	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0014	3	3	0	0	0	0	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0015	3	0	0	3	0	0	ZNF599	chr19	34753073	34778215
ZNF599_chr19_34753073_34778215	0/0	g0016	3	0	0	3	0	0	ZNF599	chr19	34753073	34778215