JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTN3A2_chr6_26360198_26383312	0/0	g0190	1	0	0	0	1	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0191	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0192	1	0	0	0	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0193	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0194	1	0	0	0	0	1	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0195	1	0	0	1	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0196	1	0	0	0	1	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0197	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0198	1	0	0	0	1	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0199	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0200	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0201	1	0	1	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0202	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0203	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0204	1	0	1	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0205	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0206	1	0	1	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0207	1	0	1	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0208	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0209	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0210	1	1	0	0	0	0	BTN3A2	chr6	26360198	26383312
BTN3A2_chr6_26360198_26383312	0/0	g0211	1	0	0	1	0	0	BTN3A2	chr6	26360198	26383312
BTN3A3_chr6_26435504_26458415	1/0	g0001	52	8	6	29	2	6	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0002	38	1	6	28	0	3	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0003	24	2	11	2	1	8	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0004	19	6	0	13	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0005	14	0	1	11	0	2	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0006	12	0	1	10	1	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0007	12	0	0	10	0	2	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0008	11	7	1	1	0	2	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0009	11	9	2	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0010	10	1	3	2	2	2	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0011	7	7	0	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0012	7	7	0	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0013	7	0	0	7	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/1	g0014	7	1	0	3	1	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0015	6	0	6	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0016	6	0	1	3	1	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0017	5	1	2	0	0	2	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0018	5	5	0	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0019	5	4	1	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0020	5	0	0	5	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0021	5	0	0	5	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0022	5	0	0	5	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0023	5	0	4	0	1	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0024	4	3	0	0	0	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0025	4	0	3	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0026	4	4	0	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0027	4	2	0	0	1	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0028	4	0	0	4	0	0	BTN3A3	chr6	26435504	26458415