JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BTN3A3_chr6_26435504_26458415	0/0	g0079	1	0	0	0	0	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0080	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0081	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0082	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0083	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0084	1	1	0	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0085	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0086	1	0	1	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0087	1	0	1	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0088	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0089	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0090	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0091	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0092	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0093	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0094	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0095	1	0	0	0	0	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0096	1	0	0	0	0	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0097	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0098	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0099	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0100	1	0	0	0	0	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0101	1	1	0	0	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0102	1	0	0	0	0	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0103	1	0	0	0	0	1	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0104	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0105	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0106	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTN3A3_chr6_26435504_26458415	0/0	g0107	1	0	0	1	0	0	BTN3A3	chr6	26435504	26458415
BTNL2_chr6_32388339_32412181	0/0	g0001	24	0	0	21	0	3	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0002	21	0	9	10	0	2	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0003	21	0	4	17	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0004	14	0	1	13	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0005	10	0	0	9	0	1	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0006	8	0	0	8	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0007	8	0	0	6	0	2	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0008	8	0	1	5	1	1	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0009	8	1	2	5	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0010	8	3	5	0	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0011	7	1	0	1	1	4	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0012	6	0	0	6	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0013	6	0	0	1	0	5	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0014	6	0	2	3	0	1	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0015	6	0	0	6	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0016	5	2	1	0	1	1	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0017	5	2	1	2	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0018	5	3	1	0	0	1	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0019	5	4	1	0	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0020	5	0	2	3	0	0	BTNL2	chr6	32388339	32412181
BTNL2_chr6_32388339_32412181	0/0	g0021	5	1	1	1	0	2	BTNL2	chr6	32388339	32412181