JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF624_chr17_16615734_16658850	0/0	g0257	1	0	0	1	0	0	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	g0258	1	0	0	1	0	0	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	g0259	1	0	0	1	0	0	ZNF624	chr17	16615734	16658850
ZNF624_chr17_16615734_16658850	0/0	g0260	1	0	0	1	0	0	ZNF624	chr17	16615734	16658850
ZNF625_chr19_12139890_12161734	0/0	g0001	33	0	5	24	0	4	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0002	21	8	2	9	0	2	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0003	18	0	2	12	0	4	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0004	11	1	6	3	0	1	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0005	9	0	6	0	3	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0006	9	0	1	7	0	1	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0007	8	1	3	0	3	1	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0008	8	0	0	8	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0009	7	0	0	7	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	1/0	g0010	6	5	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0011	6	0	1	2	0	3	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0012	6	0	0	4	0	2	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0013	6	6	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0014	5	0	5	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0015	5	5	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0016	5	4	1	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0017	4	0	0	3	0	1	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0018	4	4	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0019	3	3	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0020	3	3	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0021	3	3	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0022	3	0	1	1	0	1	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0023	3	0	2	0	1	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0024	3	0	2	0	1	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0025	3	0	3	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0026	3	0	3	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/1	g0027	3	0	1	0	1	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0028	3	0	2	0	1	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0029	3	3	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0030	3	3	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0031	2	0	0	2	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0032	2	0	1	0	0	1	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0033	2	0	0	0	0	2	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0034	2	0	0	2	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0035	2	0	2	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0036	2	0	0	2	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0037	2	0	1	1	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0038	2	0	0	2	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0039	2	2	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0040	2	0	2	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0041	2	0	2	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0042	2	0	0	0	1	1	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0043	2	2	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0044	2	2	0	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0045	2	0	2	0	0	0	ZNF625	chr19	12139890	12161734
ZNF625_chr19_12139890_12161734	0/0	g0046	2	0	1	0	1	0	ZNF625	chr19	12139890	12161734