JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF646_chr16_31069422_31089196	0/0	g0010	2	2	0	0	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0011	2	2	0	0	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0012	2	2	0	0	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0013	2	0	0	0	1	1	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0014	1	0	1	0	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0015	1	0	1	0	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0016	1	1	0	0	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0017	1	0	0	1	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0018	1	0	0	1	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0019	1	0	0	1	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0020	1	0	0	1	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0021	1	0	0	1	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0022	1	0	1	0	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0023	1	1	0	0	0	0	ZNF646	chr16	31069422	31089196
ZNF646_chr16_31069422_31089196	0/0	g0024	1	0	0	0	0	1	ZNF646	chr16	31069422	31089196
ZNF648_chr1_182049570_182066712	0/0	g0001	169	27	40	82	5	15	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/1	g0002	41	5	2	26	1	6	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0003	40	1	5	30	2	2	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0004	34	13	4	12	0	5	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	1/0	g0005	10	9	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0006	4	3	1	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0007	4	4	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0008	4	3	1	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0009	3	2	1	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0010	3	3	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0011	2	2	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0012	2	0	2	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0013	2	2	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0014	2	2	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0015	2	0	0	2	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0016	2	0	2	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0017	2	0	0	1	0	1	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0018	2	0	0	2	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0019	1	0	0	0	0	1	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0020	1	1	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0021	1	0	1	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0022	1	0	0	1	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0023	1	0	0	0	0	1	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0024	1	0	0	0	0	1	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0025	1	0	1	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0026	1	0	0	1	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0027	1	1	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0028	1	0	0	0	0	1	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0029	1	0	1	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0030	1	1	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0031	1	0	0	1	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0032	1	0	1	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0033	1	0	0	1	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0034	1	1	0	0	0	0	ZNF648	chr1	182049570	182066712
ZNF648_chr1_182049570_182066712	0/0	g0035	1	0	0	0	0	1	ZNF648	chr1	182049570	182066712