JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF660_chr3_44579964_44604694	0/0	g0053	1	0	1	0	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0054	1	0	0	1	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0055	1	1	0	0	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0056	1	0	0	1	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0057	1	1	0	0	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0058	1	1	0	0	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0059	1	0	0	1	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0060	1	1	0	0	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0061	1	0	0	1	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0062	1	0	0	0	0	1	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0063	1	0	0	1	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0064	1	0	0	1	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0065	1	0	1	0	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0066	1	1	0	0	0	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0067	1	0	0	0	0	1	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0068	1	0	0	0	1	0	ZNF660	chr3	44579964	44604694
ZNF660_chr3_44579964_44604694	0/0	g0069	1	0	0	1	0	0	ZNF660	chr3	44579964	44604694
ZNF662_chr3_42901142_42924334	0/0	g0001	58	1	16	31	1	9	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0002	17	8	6	0	1	2	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0003	16	0	2	6	3	5	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0004	12	0	6	3	2	1	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0005	12	0	4	1	1	6	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0006	12	0	0	12	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	1/0	g0007	11	9	1	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0008	10	0	0	10	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0009	10	0	2	8	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0010	10	1	0	6	0	3	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0011	9	7	2	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0012	8	0	0	7	0	1	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0013	6	6	0	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0014	6	0	0	6	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0015	6	0	2	2	0	2	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0016	5	0	0	5	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/1	g0017	5	1	1	0	1	1	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0018	5	4	0	1	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0019	5	0	2	1	1	1	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0020	5	4	1	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0021	5	0	4	0	1	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0022	4	4	0	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0023	4	0	0	3	0	1	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0024	4	4	0	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0025	4	3	1	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0026	3	2	1	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0027	3	0	3	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0028	3	0	0	2	0	1	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0029	3	0	0	3	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0030	3	0	3	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0031	3	0	1	2	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0032	3	3	0	0	0	0	ZNF662	chr3	42901142	42924334
ZNF662_chr3_42901142_42924334	0/0	g0033	2	2	0	0	0	0	ZNF662	chr3	42901142	42924334