JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF668_chr16_31055847_31079240	0/0	g0170	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0171	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0172	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0173	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0174	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0175	1	0	0	0	1	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0176	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0177	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0178	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0179	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0180	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0181	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0182	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0183	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0184	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0185	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0186	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0187	1	0	1	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0188	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0189	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0190	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0191	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0192	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0193	1	0	1	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0194	1	1	0	0	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0195	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0196	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0197	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF668_chr16_31055847_31079240	0/0	g0198	1	0	0	1	0	0	ZNF668	chr16	31055847	31079240
ZNF669_chr1_247094962_247109356	1/0	g0001	115	2	26	71	5	10	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0002	55	9	7	32	0	7	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0003	48	4	11	16	5	12	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/1	g0004	18	2	3	9	1	2	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0005	12	0	11	0	0	1	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0006	11	10	1	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0007	9	0	1	4	1	3	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0008	8	8	0	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0009	8	2	2	1	0	3	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0010	6	5	1	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0011	6	1	5	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0012	6	0	0	6	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0013	4	1	2	0	1	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0014	4	1	1	0	0	2	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0015	4	4	0	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0016	4	4	0	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0017	3	3	0	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0018	3	2	1	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0019	3	3	0	0	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0020	3	0	0	3	0	0	ZNF669	chr1	247094962	247109356
ZNF669_chr1_247094962_247109356	0/0	g0021	3	0	0	2	0	1	ZNF669	chr1	247094962	247109356