JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF682_chr19_19999418_20044505	0/0	g0264	1	0	0	1	0	0	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	g0265	1	0	0	1	0	0	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	g0266	1	0	0	1	0	0	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	g0267	1	0	0	1	0	0	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	g0268	1	0	0	1	0	0	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	g0269	1	0	0	0	0	1	ZNF682	chr19	19999418	20044505
ZNF682_chr19_19999418_20044505	0/0	g0270	1	0	0	0	0	1	ZNF682	chr19	19999418	20044505
ZNF683_chr1_26356634_26377750	0/0	g0001	71	2	5	57	0	7	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0002	66	9	21	31	1	4	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0003	33	13	4	12	2	2	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	1/0	g0004	16	4	3	6	0	2	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0005	14	7	3	1	0	3	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0006	13	12	1	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0007	11	0	8	0	1	2	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0008	10	0	0	10	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0009	9	0	6	3	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0010	8	0	3	0	3	2	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0011	7	0	0	5	0	2	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0012	7	0	0	2	4	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0013	5	2	0	3	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0014	5	4	1	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0015	4	4	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0016	3	0	0	0	0	3	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0017	3	0	2	0	0	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0018	3	3	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0019	3	1	0	2	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0020	3	0	1	0	1	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0021	3	0	0	3	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0022	3	0	0	3	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0023	3	0	0	3	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0024	3	0	0	3	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/1	g0025	2	0	0	0	1	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0026	2	0	1	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0027	2	0	1	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0028	2	1	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0029	2	0	1	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0030	2	2	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0031	2	0	0	1	0	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0032	2	0	1	0	0	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0033	2	0	0	2	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0034	2	2	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0035	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0036	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0037	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0038	1	0	0	0	1	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0039	1	0	1	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0040	1	0	0	0	0	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0041	1	0	1	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0042	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0043	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750