JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF683_chr1_26356634_26377750	0/0	g0094	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0095	1	0	0	0	0	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0096	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0097	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0098	1	0	0	0	0	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0099	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0100	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0101	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0102	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0103	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0104	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0105	1	0	1	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0106	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0107	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0108	1	0	1	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0109	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0110	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0111	1	0	0	1	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0112	1	1	0	0	0	0	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0113	1	0	0	0	0	1	ZNF683	chr1	26356634	26377750
ZNF683_chr1_26356634_26377750	0/0	g0114	1	0	0	0	0	1	ZNF683	chr1	26356634	26377750
ZNF684_chr1_40526637_40553167	0/0	g0001	44	4	14	20	3	3	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	1/0	g0002	35	1	11	13	2	7	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0003	19	4	6	6	2	1	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0004	11	0	3	8	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0005	8	1	1	6	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0006	8	0	3	1	2	2	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0007	7	0	0	7	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0008	7	0	0	7	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0009	7	0	0	6	0	1	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0010	5	0	3	2	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0011	5	1	1	3	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0012	5	1	1	3	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0013	5	5	0	0	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0014	5	0	3	0	2	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0015	4	4	0	0	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0016	4	0	2	0	2	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0017	4	1	2	1	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0018	4	0	0	4	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0019	4	0	0	4	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0020	4	0	0	0	0	4	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0021	4	4	0	0	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0022	3	3	0	0	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0023	3	0	1	2	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0024	3	0	0	0	1	2	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0025	3	3	0	0	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/1	g0026	3	0	0	0	1	1	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0027	3	0	1	0	0	2	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0028	2	0	0	2	0	0	ZNF684	chr1	40526637	40553167
ZNF684_chr1_40526637_40553167	0/0	g0029	2	0	0	2	0	0	ZNF684	chr1	40526637	40553167