JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF688_chr16_30564726_30576714	0/0	g0004	6	2	1	3	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0005	5	4	1	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0006	5	3	0	1	0	1	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0007	5	3	0	0	0	2	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0008	4	0	0	4	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0009	3	0	0	3	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0010	3	2	1	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0011	3	3	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0012	3	3	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0013	2	2	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0014	2	2	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0015	1	0	0	1	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0016	1	0	0	1	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0017	1	1	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0018	1	1	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0019	1	1	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0020	1	0	0	0	0	1	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0021	1	0	1	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0022	1	1	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF688_chr16_30564726_30576714	0/0	g0023	1	1	0	0	0	0	ZNF688	chr16	30564726	30576714
ZNF689_chr16_30597558_30615389	1/1	g0001	102	4	38	50	4	4	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0002	42	3	9	8	4	18	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0003	15	0	1	10	3	1	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0004	11	11	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0005	9	0	0	9	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0006	8	3	1	3	1	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0007	8	4	3	0	0	1	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0008	8	6	0	0	0	2	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0009	7	7	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0010	7	4	0	2	0	1	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0011	6	6	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0012	5	0	0	5	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0013	4	0	0	3	1	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0014	4	2	0	1	0	1	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0015	4	4	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0016	4	0	0	4	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0017	3	2	0	0	1	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0018	3	3	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0019	3	0	2	0	0	1	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0020	3	3	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0021	3	3	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0022	3	3	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0023	3	3	0	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0024	3	0	0	3	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0025	3	0	3	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0026	3	0	0	3	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0027	2	0	2	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0028	2	0	2	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0029	2	0	2	0	0	0	ZNF689	chr16	30597558	30615389
ZNF689_chr16_30597558_30615389	0/0	g0030	2	2	0	0	0	0	ZNF689	chr16	30597558	30615389