JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF691_chr1_42841613_42857477	0/1	g0001	154	28	25	69	7	24	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0002	83	5	8	57	4	9	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0003	73	9	15	40	1	8	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0004	43	0	5	38	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0005	17	15	2	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0006	7	0	7	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0007	6	0	0	6	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0008	6	6	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0009	5	4	1	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0010	5	5	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0011	4	4	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0012	4	4	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0013	4	4	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0014	3	0	0	3	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0015	3	2	1	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0016	3	3	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0017	2	1	1	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0018	2	0	0	2	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0019	2	0	0	2	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0020	2	2	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0021	2	0	1	0	1	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	1/0	g0022	1	0	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0023	1	1	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0024	1	0	0	0	0	1	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0025	1	0	0	1	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0026	1	1	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0027	1	1	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0028	1	1	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0029	1	0	0	1	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0030	1	0	1	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0031	1	1	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0032	1	0	0	1	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0033	1	0	0	0	1	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0034	1	1	0	0	0	0	ZNF691	chr1	42841613	42857477
ZNF691_chr1_42841613_42857477	0/0	g0035	1	0	1	0	0	0	ZNF691	chr1	42841613	42857477
ZNF692_chr1_248845008_248864085	0/0	g0001	58	2	12	26	6	12	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0002	31	6	0	23	0	2	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0003	28	1	1	24	1	1	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	1/0	g0004	24	1	5	7	4	6	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0005	18	1	4	10	0	3	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0006	12	0	8	2	2	0	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0007	12	7	0	5	0	0	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0008	9	0	3	6	0	0	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0009	9	0	2	2	1	4	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0010	8	0	4	4	0	0	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0011	8	0	0	7	0	1	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0012	8	0	2	5	0	1	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0013	8	0	1	7	0	0	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0014	7	2	0	3	0	2	ZNF692	chr1	248845008	248864085
ZNF692_chr1_248845008_248864085	0/0	g0015	7	0	2	4	1	0	ZNF692	chr1	248845008	248864085