JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BUB3_chr10_123149402_123175467	0/0	g0051	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0052	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0053	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0054	1	1	0	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0055	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0056	1	0	0	0	1	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0057	1	1	0	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0058	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0059	1	1	0	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0060	1	1	0	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0061	1	0	1	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0062	1	0	1	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0063	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0064	1	0	0	0	1	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0065	1	1	0	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0066	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0067	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0068	1	1	0	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0069	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0070	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0071	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0072	1	1	0	0	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0073	1	0	0	1	0	0	BUB3	chr10	123149402	123175467
BUB3_chr10_123149402_123175467	0/0	g0074	1	0	0	0	1	0	BUB3	chr10	123149402	123175467
BUD13_chr11_116743173_116777987	0/0	g0001	20	0	5	12	1	2	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/1	g0002	18	0	2	13	0	2	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0003	12	0	1	10	0	1	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0004	11	0	3	4	2	2	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0005	10	3	2	0	1	4	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	1/0	g0006	10	0	0	8	1	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0007	8	0	1	6	0	1	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0008	6	0	0	6	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0009	5	0	0	5	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0010	5	0	2	2	0	1	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0011	5	5	0	0	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0012	4	0	0	4	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0013	4	1	0	0	1	2	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0014	4	1	0	3	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0015	4	0	1	3	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0016	4	0	0	4	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0017	4	3	1	0	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0018	4	0	4	0	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0019	3	0	3	0	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0020	3	3	0	0	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0021	3	0	1	1	0	1	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0022	3	0	0	3	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0023	3	0	0	3	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0024	3	2	1	0	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0025	3	3	0	0	0	0	BUD13	chr11	116743173	116777987
BUD13_chr11_116743173_116777987	0/0	g0026	3	2	1	0	0	0	BUD13	chr11	116743173	116777987