JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BUD23_chr7_73678597_73703212	0/0	g0150	1	0	1	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0151	1	0	0	0	1	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0152	1	0	1	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0153	1	0	1	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0154	1	0	0	0	0	1	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0155	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0156	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0157	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0158	1	0	0	0	0	1	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0159	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0160	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0161	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0162	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0163	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0164	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0165	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0166	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0167	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0168	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0169	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0170	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0171	1	0	0	0	0	1	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0172	1	0	0	0	0	1	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0173	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0174	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0175	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0176	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0177	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0178	1	0	0	1	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0179	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0180	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0181	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0182	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0183	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0184	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0185	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0186	1	1	0	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0187	1	0	1	0	0	0	BUD23	chr7	73678597	73703212
BUD23_chr7_73678597_73703212	0/0	g0188	1	0	1	0	0	0	BUD23	chr7	73678597	73703212
BUD31_chr7_99403969_99424616	1/1	g0001	86	1	16	52	7	8	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0002	16	1	0	15	0	0	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0003	15	12	0	1	1	1	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0004	11	10	1	0	0	0	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0005	10	0	2	5	0	3	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0006	10	0	0	10	0	0	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0007	9	3	0	1	0	5	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0008	6	4	0	0	0	2	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0009	6	1	2	2	0	1	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0010	6	0	0	4	0	2	BUD31	chr7	99403969	99424616
BUD31_chr7_99403969_99424616	0/0	g0011	6	1	0	4	0	1	BUD31	chr7	99403969	99424616