JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
BVES_chr6_105091822_105142157	0/0	g0172	1	0	1	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0173	1	0	1	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0174	1	0	1	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0175	1	1	0	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0176	1	0	0	0	0	1	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0177	1	0	1	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0178	1	0	1	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0179	1	0	1	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0180	1	1	0	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0181	1	1	0	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0182	1	0	0	1	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0183	1	0	0	1	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0184	1	1	0	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0185	1	1	0	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0186	1	0	0	1	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0187	1	0	1	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0188	1	0	0	0	0	1	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0189	1	1	0	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0190	1	0	0	1	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0191	1	0	0	0	0	1	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0192	1	0	0	1	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0193	1	1	0	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0194	1	0	1	0	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0195	1	0	0	1	0	0	BVES	chr6	105091822	105142157
BVES_chr6_105091822_105142157	0/0	g0196	1	0	0	1	0	0	BVES	chr6	105091822	105142157
BYSL_chr6_41916499_41938046	0/0	g0001	85	12	13	48	1	11	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	1/0	g0002	70	2	11	37	4	15	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0003	47	10	4	22	4	7	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0004	38	1	8	23	3	3	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0005	28	3	1	20	0	4	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0006	21	5	15	0	0	1	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0007	7	0	0	7	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0008	6	0	1	5	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0009	5	5	0	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0010	5	5	0	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0011	5	4	1	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0012	5	3	0	1	0	1	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/1	g0013	5	0	4	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0014	4	4	0	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0015	4	4	0	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0016	4	0	1	3	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0017	4	3	1	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0018	4	0	0	4	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0019	4	4	0	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0020	3	0	3	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0021	3	0	0	3	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0022	3	3	0	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0023	2	0	2	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0024	2	2	0	0	0	0	BYSL	chr6	41916499	41938046
BYSL_chr6_41916499_41938046	0/0	g0025	2	0	1	1	0	0	BYSL	chr6	41916499	41938046