JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF77_chr19_2928218_2949971	0/0	g0367	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0368	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0369	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0370	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0371	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0372	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0373	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0374	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0375	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0376	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0377	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0378	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0379	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0380	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0381	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0382	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0383	1	0	0	1	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0384	1	0	0	1	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0385	1	0	0	0	0	1	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0386	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0387	1	0	1	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0388	1	0	0	1	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0389	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0390	1	0	0	1	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0391	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0392	1	0	0	0	0	1	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0393	1	0	0	0	0	1	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0394	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0395	1	0	1	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0396	1	0	0	1	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0397	1	0	0	1	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0398	1	1	0	0	0	0	ZNF77	chr19	2928218	2949971
ZNF77_chr19_2928218_2949971	0/0	g0399	1	0	0	1	0	0	ZNF77	chr19	2928218	2949971
ZNF780A_chr19_40068045_40095943	1/1	g0001	49	2	13	21	3	8	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0002	34	1	9	16	1	7	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0003	18	0	0	18	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0004	15	8	0	6	0	1	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0005	11	11	0	0	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0006	8	0	0	8	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0007	8	2	1	4	0	1	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0008	7	5	2	0	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0009	6	0	0	5	0	1	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0010	6	0	0	6	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0011	5	2	1	1	0	1	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0012	4	4	0	0	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0013	4	4	0	0	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0014	4	4	0	0	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0015	4	0	0	4	0	0	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0016	4	0	3	0	0	1	ZNF780A	chr19	40068045	40095943
ZNF780A_chr19_40068045_40095943	0/0	g0017	4	0	0	4	0	0	ZNF780A	chr19	40068045	40095943