JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF782_chr9_96811269_96859514	0/0	g0169	1	0	1	0	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0170	1	0	0	0	0	1	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0171	1	0	0	1	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0172	1	0	0	1	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0173	1	0	0	1	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0174	1	0	0	0	0	1	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0175	1	0	0	1	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0176	1	0	0	1	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0177	1	0	0	1	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0178	1	0	0	1	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0179	1	1	0	0	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0180	1	1	0	0	0	0	ZNF782	chr9	96811269	96859514
ZNF782_chr9_96811269_96859514	0/0	g0181	1	1	0	0	0	0	ZNF782	chr9	96811269	96859514
ZNF783_chr7_149257196_149289988	0/0	g0001	29	0	6	20	0	3	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0002	12	0	4	0	2	6	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0003	12	1	1	10	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0004	9	0	3	6	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	1/0	g0005	8	1	2	2	0	2	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0006	7	0	0	7	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0007	6	1	0	5	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0008	6	0	1	5	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0009	5	0	0	5	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0010	4	0	2	0	1	1	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0011	4	4	0	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0012	4	4	0	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0013	3	3	0	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0014	3	0	1	2	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0015	3	0	0	3	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0016	3	0	0	3	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0017	3	3	0	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0018	3	2	1	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0019	3	0	0	3	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0020	3	0	1	2	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0021	3	0	3	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0022	2	0	0	0	1	1	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0023	2	0	2	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0024	2	0	2	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0025	2	0	0	2	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0026	2	0	0	1	0	1	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0027	2	0	1	0	0	1	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0028	2	2	0	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0029	2	0	2	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0030	2	2	0	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0031	2	2	0	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0032	2	0	2	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0033	2	0	0	0	0	2	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0034	2	1	0	0	0	1	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0035	2	0	2	0	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0036	2	0	0	2	0	0	ZNF783	chr7	149257196	149289988
ZNF783_chr7_149257196_149289988	0/0	g0037	2	0	0	2	0	0	ZNF783	chr7	149257196	149289988