JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF827_chr4_145752627_145943823	0/0	g0226	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0227	1	0	0	0	0	1	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0228	1	0	0	0	0	1	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0229	1	0	0	1	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0230	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0231	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0232	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0233	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0234	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0235	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0236	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0237	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0238	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0239	1	0	1	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0240	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0241	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0242	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0243	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0244	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0245	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0246	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0247	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0248	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0249	1	0	1	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0250	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0251	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0252	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0253	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF827_chr4_145752627_145943823	0/0	g0254	1	1	0	0	0	0	ZNF827	chr4	145752627	145943823
ZNF829_chr19_36883124_36921291	0/0	g0001	21	1	2	16	2	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0002	21	1	1	15	1	3	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0003	17	0	0	16	0	1	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0004	11	2	5	1	1	2	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/1	g0005	6	0	2	2	0	1	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0006	5	0	0	5	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0007	4	0	2	0	2	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0008	4	0	4	0	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0009	4	0	1	3	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0010	4	0	0	4	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0011	4	0	3	0	0	1	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0012	4	4	0	0	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0013	3	3	0	0	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0014	3	0	2	0	1	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0015	3	0	0	3	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0016	3	0	2	0	0	1	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0017	3	3	0	0	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0018	3	0	0	3	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0019	3	3	0	0	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0020	3	2	0	1	0	0	ZNF829	chr19	36883124	36921291
ZNF829_chr19_36883124_36921291	0/0	g0021	2	2	0	0	0	0	ZNF829	chr19	36883124	36921291