JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF831_chr20_59158821_59264113	0/0	g0301	1	1	0	0	0	0	ZNF831	chr20	59158821	59264113
ZNF835_chr19_56656980_56676757	0/0	g0001	53	11	4	34	0	4	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	1/0	g0002	49	6	22	8	3	9	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0003	32	4	5	14	3	6	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0004	27	0	0	27	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0005	26	0	7	11	0	8	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0006	11	2	7	0	2	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0007	11	0	5	6	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0008	10	0	0	10	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0009	9	0	0	9	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0010	9	0	1	8	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0011	8	8	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0012	7	0	0	7	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0013	5	5	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0014	5	0	1	0	2	2	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0015	4	4	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0016	4	0	0	3	0	1	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0017	4	0	4	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/1	g0018	4	0	1	0	2	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0019	4	1	1	0	2	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0020	4	2	2	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0021	4	0	0	4	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0022	3	3	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0023	3	2	1	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0024	3	0	0	3	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0025	3	3	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0026	3	0	0	3	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0027	2	0	1	0	0	1	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0028	2	1	0	1	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0029	2	0	0	0	0	2	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0030	2	2	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0031	2	1	0	0	1	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0032	2	0	2	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0033	2	2	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0034	2	2	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0035	2	2	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0036	2	1	1	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0037	2	2	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0038	2	0	0	2	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0039	2	0	0	2	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0040	2	1	0	0	0	1	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0041	2	0	0	2	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0042	2	0	0	2	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0043	2	0	1	0	0	1	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0044	2	0	0	2	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0045	2	2	0	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0046	1	0	0	1	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0047	1	0	1	0	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0048	1	0	0	1	0	0	ZNF835	chr19	56656980	56676757
ZNF835_chr19_56656980_56676757	0/0	g0049	1	0	1	0	0	0	ZNF835	chr19	56656980	56676757