JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF841_chr19_52059465_52100765	0/0	g0265	1	1	0	0	0	0	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	g0266	1	1	0	0	0	0	ZNF841	chr19	52059465	52100765
ZNF841_chr19_52059465_52100765	0/0	g0267	1	1	0	0	0	0	ZNF841	chr19	52059465	52100765
ZNF843_chr16_31430434_31447789	0/1	g0001	56	3	21	21	5	5	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0002	47	3	12	26	1	5	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0003	32	0	3	29	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0004	30	4	7	6	3	10	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	1/0	g0005	23	0	1	20	1	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0006	10	0	0	9	0	1	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0007	10	2	1	7	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0008	10	5	0	5	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0009	9	0	0	7	0	2	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0010	8	8	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0011	7	7	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0012	6	0	2	0	2	2	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0013	6	4	1	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0014	5	0	1	4	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0015	5	5	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0016	4	3	1	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0017	4	1	1	2	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0018	3	3	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0019	3	1	0	0	0	2	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0020	3	3	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0021	3	1	2	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0022	3	0	2	0	1	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0023	3	0	2	0	1	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0024	3	0	1	2	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0025	3	0	0	3	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0026	3	0	0	2	0	1	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0027	3	0	0	3	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0028	3	0	0	2	0	1	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0029	3	0	1	2	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0030	3	0	1	1	0	1	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0031	2	0	0	0	1	1	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0032	2	2	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0033	2	2	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0034	2	2	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0035	2	0	0	0	0	2	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0036	2	0	0	2	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0037	2	2	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0038	2	2	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0039	2	0	1	0	0	1	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0040	2	0	0	2	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0041	2	2	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0042	2	0	0	2	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0043	2	0	0	2	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0044	2	2	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0045	2	0	0	0	0	2	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0046	2	0	0	2	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0047	2	2	0	0	0	0	ZNF843	chr16	31430434	31447789