JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF843_chr16_31430434_31447789	0/0	g0098	1	0	0	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0099	1	0	1	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0100	1	0	0	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0101	1	0	0	0	0	1	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0102	1	0	0	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0103	1	0	0	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0104	1	1	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0105	1	0	0	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0106	1	0	0	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0107	1	0	0	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0108	1	0	1	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0109	1	0	0	1	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0110	1	1	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0111	1	1	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0112	1	1	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0113	1	1	0	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0114	1	0	1	0	0	0	ZNF843	chr16	31430434	31447789
ZNF843_chr16_31430434_31447789	0/0	g0115	1	0	1	0	0	0	ZNF843	chr16	31430434	31447789
ZNF844_chr19_12059731_12086565	0/0	g0001	9	0	5	4	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0002	7	0	1	3	0	3	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0003	7	0	0	7	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0004	7	0	6	0	0	1	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0005	5	0	3	2	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0006	5	5	0	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0007	4	0	0	0	4	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0008	4	0	2	2	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0009	4	0	2	0	0	2	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0010	4	1	0	3	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0011	4	1	2	1	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0012	3	3	0	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0013	3	0	3	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0014	3	0	0	1	1	1	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0015	3	0	0	3	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0016	3	0	1	1	0	1	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0017	3	0	0	3	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0018	3	1	1	0	0	1	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0019	3	0	0	3	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0020	3	0	3	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0021	3	0	1	2	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0022	3	2	1	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0023	2	2	0	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0024	2	2	0	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0025	2	1	1	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0026	2	0	0	2	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0027	2	2	0	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0028	2	2	0	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0029	2	0	0	2	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0030	2	1	1	0	0	0	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0031	2	0	0	1	0	1	ZNF844	chr19	12059731	12086565
ZNF844_chr19_12059731_12086565	0/0	g0032	2	0	0	2	0	0	ZNF844	chr19	12059731	12086565