JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNF878_chr19_12038805_12057961	0/0	g0104	1	1	0	0	0	0	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	g0105	1	1	0	0	0	0	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	g0106	1	1	0	0	0	0	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	g0107	1	1	0	0	0	0	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	g0108	1	0	0	0	0	1	ZNF878	chr19	12038805	12057961
ZNF878_chr19_12038805_12057961	0/0	g0109	1	0	0	1	0	0	ZNF878	chr19	12038805	12057961
ZNF879_chr5_179018804_179040064	0/0	g0001	79	1	6	67	2	3	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0002	59	0	13	34	4	8	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	1/0	g0003	50	3	17	20	3	6	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0004	41	20	14	1	1	5	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0005	31	2	2	20	1	6	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0006	19	11	2	3	1	2	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0007	16	0	6	10	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0008	13	0	0	8	0	5	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0009	10	0	1	9	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/1	g0010	8	3	0	2	1	1	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0011	6	5	1	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0012	6	0	5	0	1	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0013	5	5	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0014	5	0	0	4	0	1	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0015	5	5	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0016	4	0	0	4	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0017	4	4	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0018	4	4	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0019	3	2	1	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0020	3	2	1	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0021	3	3	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0022	3	0	1	1	0	1	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0023	2	0	0	2	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0024	2	0	1	0	1	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0025	2	0	2	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0026	2	0	0	1	0	1	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0027	2	2	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0028	2	0	0	0	0	2	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0029	2	0	0	2	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0030	2	0	0	2	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0031	2	0	0	2	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0032	2	0	0	1	0	1	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0033	2	1	1	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0034	1	0	0	1	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0035	1	0	0	1	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0036	1	1	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0037	1	1	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0038	1	0	1	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0039	1	1	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0040	1	0	0	1	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0041	1	0	0	1	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0042	1	0	1	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0043	1	1	0	0	0	0	ZNF879	chr5	179018804	179040064
ZNF879_chr5_179018804_179040064	0/0	g0044	1	1	0	0	0	0	ZNF879	chr5	179018804	179040064