JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNG1F_chr9_41126309_41194317	0/0	g0252	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0253	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0254	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0255	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0256	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0257	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0258	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0259	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0260	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0261	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0262	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0263	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0264	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0265	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0266	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0267	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0268	1	0	0	0	0	1	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0269	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0270	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0271	1	0	0	0	0	1	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0272	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0273	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0274	1	0	1	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0275	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0276	1	0	0	1	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0277	1	1	0	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0278	1	1	0	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0279	1	1	0	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0280	1	1	0	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0281	1	1	0	0	0	0	ZNG1F	chr9	41126309	41194317
ZNG1F_chr9_41126309_41194317	0/0	g0282	1	1	0	0	0	0	ZNG1F	chr9	41126309	41194317
ZNHIT1_chr7_101213165_101229190	0/1	g0001	148	29	32	60	8	18	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0002	43	7	2	20	1	13	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0003	22	4	3	13	1	1	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0004	19	0	2	17	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0005	15	1	1	11	0	2	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0006	13	6	3	0	4	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0007	11	0	0	11	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0008	11	0	0	11	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0009	10	0	0	10	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0010	9	9	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0011	6	0	1	0	3	2	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0012	5	5	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0013	5	1	0	1	0	3	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0014	5	5	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0015	4	0	0	4	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0016	4	0	1	2	0	1	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0017	4	0	4	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0018	3	3	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0019	3	0	0	0	0	3	ZNHIT1	chr7	101213165	101229190