JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNHIT1_chr7_101213165_101229190	0/0	g0020	3	3	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0021	2	0	0	2	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0022	2	2	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0023	2	2	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0024	2	0	1	0	0	1	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0025	2	0	0	2	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0026	2	0	0	2	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0027	2	2	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0028	2	0	0	1	0	1	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0029	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0030	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0031	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0032	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0033	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0034	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0035	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0036	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0037	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0038	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0039	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0040	1	0	1	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0041	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0042	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	1/0	g0043	1	0	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0044	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0045	1	0	1	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0046	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0047	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0048	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0049	1	0	0	0	1	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0050	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0051	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0052	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0053	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0054	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0055	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0056	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0057	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0058	1	0	0	1	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0059	1	0	0	0	0	1	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0060	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT1_chr7_101213165_101229190	0/0	g0061	1	1	0	0	0	0	ZNHIT1	chr7	101213165	101229190
ZNHIT2_chr11_65111403_65122701	1/1	g0000	384	96	68	162	16	40	ZNHIT2	chr11	65111403	65122701
ZNHIT3_chr17_36481681_36500822	0/0	g0001	85	25	15	38	2	5	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	g0002	73	0	16	38	6	13	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	g0003	21	0	4	17	0	0	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	g0004	13	0	3	10	0	0	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	g0005	12	2	3	2	0	5	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	g0006	10	5	1	2	1	1	ZNHIT3	chr17	36481681	36500822
ZNHIT3_chr17_36481681_36500822	0/0	g0007	7	0	0	6	0	1	ZNHIT3	chr17	36481681	36500822