JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZNRF3_chr22_28878572_29062488	0/0	g0242	1	0	1	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0243	1	1	0	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0244	1	0	1	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0245	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0246	1	0	1	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0247	1	0	1	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0248	1	1	0	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0249	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0250	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0251	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0252	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0253	1	0	1	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0254	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0255	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0256	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0257	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0258	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0259	1	0	1	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0260	1	0	1	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0261	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0262	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0263	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0264	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0265	1	0	0	0	1	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0266	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0267	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0268	1	0	0	0	0	1	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0269	1	1	0	0	0	0	ZNRF3	chr22	28878572	29062488
ZNRF3_chr22_28878572_29062488	0/0	g0270	1	0	0	1	0	0	ZNRF3	chr22	28878572	29062488
ZNRF4_chr19_5450417_5461856	1/1	g0000	434	90	80	196	18	48	ZNRF4	chr19	5450417	5461856
ZP1_chr11_60862542_60880687	0/0	g0001	132	6	22	84	7	13	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/1	g0002	107	8	20	63	4	11	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0003	30	0	20	5	2	3	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0004	14	14	0	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0005	13	13	0	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0006	7	7	0	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0007	7	0	0	7	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0008	6	5	1	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0009	6	6	0	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0010	6	3	1	2	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0011	5	5	0	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0012	4	1	0	0	1	2	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0013	4	0	1	3	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0014	4	4	0	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0015	3	1	2	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0016	3	0	2	0	1	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0017	2	2	0	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0018	2	0	2	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0019	2	2	0	0	0	0	ZP1	chr11	60862542	60880687
ZP1_chr11_60862542_60880687	0/0	g0020	2	0	0	0	0	2	ZP1	chr11	60862542	60880687