JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZPLD1_chr3_102430015_102484841	0/0	g0214	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0215	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0216	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0217	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0218	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0219	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0220	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0221	1	0	0	0	0	1	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0222	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0223	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0224	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0225	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0226	1	0	0	1	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0227	1	0	0	1	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0228	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0229	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0230	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0231	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0232	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0233	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0234	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0235	1	0	0	0	1	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0236	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0237	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0238	1	1	0	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0239	1	0	0	0	1	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0240	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0241	1	0	0	1	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0242	1	0	0	0	0	1	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0243	1	0	0	0	1	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0244	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0245	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0246	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0247	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0248	1	0	1	0	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0249	1	0	0	1	0	0	ZPLD1	chr3	102430015	102484841
ZPLD1_chr3_102430015_102484841	0/0	g0250	1	0	0	1	0	0	ZPLD1	chr3	102430015	102484841
ZPR1_chr11_116768799_116793023	0/0	g0001	40	10	3	26	0	1	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0002	29	0	3	19	2	5	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0003	19	2	6	7	2	2	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/1	g0004	17	1	4	9	0	2	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	1/0	g0005	17	0	1	12	1	2	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0006	16	0	0	13	1	2	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0007	13	1	0	12	0	0	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0008	12	0	6	3	1	2	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0009	11	2	5	0	2	2	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0010	11	0	0	9	0	2	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0011	8	5	3	0	0	0	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0012	8	2	6	0	0	0	ZPR1	chr11	116768799	116793023
ZPR1_chr11_116768799_116793023	0/0	g0013	7	0	0	6	0	1	ZPR1	chr11	116768799	116793023