JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZRANB3_chr2_135191969_135536218	0/0	g0196	1	1	0	0	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0197	1	1	0	0	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0198	1	1	0	0	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0199	1	1	0	0	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0200	1	0	0	0	0	1	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0201	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0202	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0203	1	0	0	0	0	1	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0204	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0205	1	0	0	0	0	1	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0206	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0207	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0208	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0209	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0210	1	1	0	0	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0211	1	1	0	0	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0212	1	1	0	0	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0213	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRANB3_chr2_135191969_135536218	0/0	g0214	1	0	0	1	0	0	ZRANB3	chr2	135191969	135536218
ZRSR2_chrX_15785484_15828260	0/0	g0001	10	1	3	4	0	2	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0002	10	2	2	6	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0003	6	0	0	6	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0004	6	0	2	2	2	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0005	5	2	1	1	0	1	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/1	g0006	4	0	0	0	3	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0007	4	0	1	3	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0008	4	3	1	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0009	4	3	1	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0010	4	4	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0011	3	0	0	2	0	1	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0012	3	0	0	3	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0013	3	0	0	3	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0014	3	0	0	3	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0015	3	0	0	3	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0016	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0017	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0018	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0019	2	0	1	1	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0020	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0021	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0022	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0023	2	2	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0024	2	0	1	1	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0025	2	0	0	1	1	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0026	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0027	2	0	1	1	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0028	2	2	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0029	2	2	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0030	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0031	2	0	0	2	0	0	ZRSR2	chrX	15785484	15828260