JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZRSR2_chrX_15785484_15828260	0/0	g0232	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0233	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0234	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0235	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0236	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0237	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0238	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0239	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0240	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0241	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	1/0	g0242	1	0	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0243	1	1	0	0	0	0	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0244	1	0	0	0	0	1	ZRSR2	chrX	15785484	15828260
ZRSR2_chrX_15785484_15828260	0/0	g0245	1	0	1	0	0	0	ZRSR2	chrX	15785484	15828260
ZSCAN10_chr16_3083890_3104294	0/0	g0001	47	8	7	17	6	9	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/1	g0002	20	2	6	4	3	4	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0003	15	1	1	13	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0004	14	0	1	13	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0005	13	0	0	13	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0006	12	0	2	10	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	1/0	g0007	10	0	7	1	0	1	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0008	8	0	0	8	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0009	8	2	0	5	0	1	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0010	6	5	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0011	6	0	6	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0012	5	0	5	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0013	5	0	0	5	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0014	5	5	0	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0015	5	5	0	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0016	4	0	0	4	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0017	4	0	0	2	0	2	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0018	4	4	0	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0019	4	3	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0020	4	0	1	0	0	3	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0021	4	4	0	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0022	4	1	0	2	0	1	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0023	3	2	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0024	3	0	0	3	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0025	3	0	1	1	1	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0026	3	0	0	3	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0027	3	0	1	0	2	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0028	3	3	0	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0029	3	0	0	3	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0030	3	2	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0031	3	0	2	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0032	3	0	1	2	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0033	3	0	0	3	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0034	2	0	2	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0035	2	2	0	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0036	2	2	0	0	0	0	ZSCAN10	chr16	3083890	3104294