JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN10_chr16_3083890_3104294	0/0	g0187	1	1	0	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0188	1	1	0	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0189	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0190	1	0	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0191	1	0	0	0	0	1	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0192	1	0	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0193	1	0	0	0	0	1	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0194	1	0	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0195	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0196	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0197	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0198	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0199	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0200	1	0	0	0	1	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0201	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0202	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0203	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0204	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0205	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0206	1	0	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0207	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0208	1	0	0	0	0	1	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0209	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0210	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0211	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0212	1	0	0	1	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN10_chr16_3083890_3104294	0/0	g0213	1	0	1	0	0	0	ZSCAN10	chr16	3083890	3104294
ZSCAN12_chr6_28379738_28404747	1/0	g0001	75	0	10	51	2	11	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0002	36	1	1	32	0	2	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0003	19	1	3	15	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0004	15	1	1	11	0	2	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0005	14	0	3	9	1	1	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/1	g0006	13	5	0	4	1	2	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0007	12	6	3	0	3	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0008	10	9	1	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0009	9	0	4	5	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0010	8	0	0	8	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0011	7	0	1	6	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0012	7	0	2	4	0	1	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0013	6	1	3	1	0	1	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0014	6	0	4	2	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0015	6	5	1	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0016	5	0	4	0	1	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0017	5	0	2	2	0	1	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0018	4	0	2	0	2	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0019	4	2	2	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0020	4	4	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0021	4	4	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0022	4	4	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0023	4	4	0	0	0	0	ZSCAN12	chr6	28379738	28404747