JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN12_chr6_28379738_28404747	0/0	g0124	1	0	0	0	0	1	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0125	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0126	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0127	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0128	1	0	1	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0129	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0130	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0131	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0132	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0133	1	0	0	0	0	1	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0134	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0135	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0136	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0137	1	0	1	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0138	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0139	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0140	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0141	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0142	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0143	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0144	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0145	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0146	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0147	1	0	0	1	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0148	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN12_chr6_28379738_28404747	0/0	g0149	1	1	0	0	0	0	ZSCAN12	chr6	28379738	28404747
ZSCAN16_chr6_28119609_28135082	1/0	g0001	96	2	18	48	7	20	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/1	g0002	81	18	2	49	3	8	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0003	57	6	10	37	0	4	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0004	39	4	10	22	0	3	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0005	36	11	4	18	0	3	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0006	12	0	0	12	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0007	11	10	1	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0008	10	0	0	10	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0009	7	6	1	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0010	7	0	6	0	1	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0011	6	5	1	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0012	5	4	1	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0013	5	0	0	5	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0014	5	0	0	5	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0015	5	5	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0016	5	5	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0017	5	0	3	0	2	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0018	5	2	3	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0019	4	1	1	0	1	1	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0020	3	3	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0021	3	3	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0022	3	0	0	3	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0023	2	0	0	0	0	2	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0024	2	2	0	0	0	0	ZSCAN16	chr6	28119609	28135082