JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN16_chr6_28119609_28135082	0/0	g0025	1	1	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0026	1	1	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0027	1	1	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0028	1	1	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0029	1	0	1	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0030	1	0	1	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0031	1	0	1	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0032	1	0	0	1	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0033	1	0	0	0	0	1	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0034	1	0	0	1	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0035	1	0	0	1	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0036	1	1	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0037	1	1	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN16_chr6_28119609_28135082	0/0	g0038	1	1	0	0	0	0	ZSCAN16	chr6	28119609	28135082
ZSCAN18_chr19_58078856_58103231	0/0	g0001	9	1	1	5	0	2	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0002	8	0	5	1	0	2	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0003	8	0	3	5	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0004	7	0	0	7	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0005	7	0	0	7	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0006	6	0	0	6	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0007	5	0	0	4	0	1	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0008	5	0	2	3	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0009	5	0	1	4	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0010	4	0	2	2	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0011	4	0	2	2	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0012	4	0	0	4	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0013	3	3	0	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0014	3	1	0	1	1	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0015	3	0	0	3	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0016	3	1	2	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0017	3	0	0	3	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0018	3	0	0	3	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0019	3	0	0	3	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0020	3	0	1	0	1	1	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0021	3	0	3	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0022	3	0	1	0	0	2	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0023	3	3	0	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0024	3	0	1	2	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0025	3	0	1	2	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0026	3	0	1	2	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0027	3	3	0	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0028	2	2	0	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0029	2	2	0	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0030	2	0	0	2	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0031	2	0	0	2	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0032	2	0	0	0	2	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0033	2	0	1	1	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0034	2	2	0	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0035	2	2	0	0	0	0	ZSCAN18	chr19	58078856	58103231
ZSCAN18_chr19_58078856_58103231	0/0	g0036	2	0	0	2	0	0	ZSCAN18	chr19	58078856	58103231