JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN20_chr1_33467645_33506643	0/0	g0139	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0140	1	0	0	0	1	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0141	1	0	1	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0142	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0143	1	0	0	0	0	1	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0144	1	0	0	0	0	1	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0145	1	0	1	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0146	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0147	1	0	1	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0148	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0149	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0150	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0151	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0152	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0153	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0154	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0155	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0156	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0157	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0158	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0159	1	0	0	0	0	1	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0160	1	0	0	0	0	1	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0161	1	0	0	0	0	1	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0162	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0163	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0164	1	0	0	0	0	1	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0165	1	0	0	0	0	1	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0166	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0167	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0168	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0169	1	0	0	0	0	1	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0170	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0171	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0172	1	0	1	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0173	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0174	1	0	0	1	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN20_chr1_33467645_33506643	0/0	g0175	1	1	0	0	0	0	ZSCAN20	chr1	33467645	33506643
ZSCAN21_chr7_100044774_100070040	0/0	g0001	12	2	3	3	2	2	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0002	12	1	3	6	0	2	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0003	6	0	1	4	0	1	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0004	6	0	1	3	0	2	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0005	6	0	0	5	0	1	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0006	5	2	2	1	0	0	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0007	5	0	3	2	0	0	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0008	5	0	1	4	0	0	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0009	4	0	0	2	1	1	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0010	4	4	0	0	0	0	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0011	4	0	0	4	0	0	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0012	3	0	1	2	0	0	ZSCAN21	chr7	100044774	100070040
ZSCAN21_chr7_100044774_100070040	0/0	g0013	3	0	3	0	0	0	ZSCAN21	chr7	100044774	100070040