JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN22_chr19_58321994_58347332	0/0	g0103	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0104	1	0	1	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0105	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0106	1	0	0	0	0	1	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0107	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0108	1	0	0	0	0	1	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0109	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0110	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0111	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0112	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0113	1	0	0	0	0	1	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0114	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0115	1	0	0	0	0	1	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0116	1	0	1	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0117	1	0	1	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0118	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0119	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0120	1	0	0	0	0	1	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0121	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0122	1	0	0	0	1	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0123	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0124	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0125	1	0	0	0	0	1	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0126	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0127	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0128	1	0	0	0	0	1	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0129	1	0	0	1	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0130	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0131	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0132	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0133	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0134	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0135	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0136	1	0	1	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0137	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0138	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN22_chr19_58321994_58347332	0/0	g0139	1	1	0	0	0	0	ZSCAN22	chr19	58321994	58347332
ZSCAN23_chr6_28427655_28448491	0/0	g0001	104	9	17	55	5	18	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0002	54	6	5	41	0	2	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0003	37	9	4	23	0	1	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0004	25	0	0	23	1	1	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0005	22	7	7	2	4	2	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0006	17	6	5	5	0	1	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0007	15	1	1	11	0	2	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0008	13	12	1	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0009	12	2	4	6	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/1	g0010	11	2	1	3	1	3	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0011	9	2	2	5	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0012	7	0	7	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0013	5	5	0	0	0	0	ZSCAN23	chr6	28427655	28448491