JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN23_chr6_28427655_28448491	0/0	g0064	1	0	0	0	0	1	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0065	1	1	0	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0066	1	1	0	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0067	1	0	1	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0068	1	0	1	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0069	1	0	0	1	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0070	1	0	0	1	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0071	1	0	1	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0072	1	1	0	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0073	1	0	0	1	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0074	1	1	0	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0075	1	1	0	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0076	1	1	0	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0077	1	1	0	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0078	1	1	0	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0079	1	0	1	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0080	1	0	1	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0081	1	0	1	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0082	1	0	0	0	1	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0083	1	0	0	1	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0084	1	0	0	1	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0085	1	0	1	0	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN23_chr6_28427655_28448491	0/0	g0086	1	0	0	1	0	0	ZSCAN23	chr6	28427655	28448491
ZSCAN25_chr7_99611946_99637408	1/0	g0001	120	10	20	65	8	16	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0002	42	5	5	28	1	3	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0003	22	0	0	12	0	10	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0004	13	12	1	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0005	12	0	0	12	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0006	12	8	4	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0007	10	0	7	0	1	2	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0008	9	1	0	7	0	1	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0009	8	8	0	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0010	6	6	0	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0011	4	0	0	4	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0012	4	0	3	1	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0013	4	1	3	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0014	4	4	0	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0015	4	0	0	4	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0016	4	4	0	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/1	g0017	3	0	0	0	2	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0018	3	0	0	3	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0019	3	3	0	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0020	3	3	0	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0021	3	0	0	3	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0022	2	0	0	2	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0023	2	2	0	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0024	2	2	0	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0025	2	0	0	2	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0026	2	0	2	0	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0027	2	2	0	0	0	0	ZSCAN25	chr7	99611946	99637408