JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN25_chr7_99611946_99637408	0/0	g0078	1	0	0	0	0	1	ZSCAN25	chr7	99611946	99637408
ZSCAN25_chr7_99611946_99637408	0/0	g0079	1	0	0	1	0	0	ZSCAN25	chr7	99611946	99637408
ZSCAN26_chr6_28262143_28283204	1/0	g0001	115	3	26	55	7	23	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0002	50	1	5	43	0	1	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0003	46	11	8	25	0	2	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/1	g0004	36	18	4	4	4	5	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0005	29	5	3	19	0	2	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0006	26	9	1	13	1	2	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0007	16	15	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0008	15	0	1	12	0	2	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0009	11	6	4	0	1	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0010	6	0	0	6	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0011	5	5	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0012	5	0	4	0	1	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0013	4	0	3	0	0	1	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0014	4	3	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0015	4	1	3	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0016	3	3	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0017	3	0	0	3	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0018	3	0	0	3	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0019	2	0	0	2	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0020	2	0	0	2	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0021	2	1	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0022	2	0	2	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0023	2	2	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0024	1	0	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0025	1	0	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0026	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0027	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0028	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0029	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0030	1	0	0	0	0	1	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0031	1	0	0	0	0	1	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0032	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0033	1	0	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0034	1	0	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0035	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0036	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0037	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0038	1	0	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0039	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0040	1	0	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0041	1	0	0	0	0	1	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0042	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0043	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0044	1	0	0	0	0	1	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0045	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0046	1	0	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0047	1	0	1	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0048	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204