JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN26_chr6_28262143_28283204	0/0	g0049	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0050	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0051	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0052	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0053	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0054	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0055	1	0	0	1	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN26_chr6_28262143_28283204	0/0	g0056	1	1	0	0	0	0	ZSCAN26	chr6	28262143	28283204
ZSCAN29_chr15_43353175_43376043	0/0	g0001	42	1	8	25	1	7	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0002	40	17	2	18	0	3	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/1	g0003	28	0	10	14	0	3	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0004	17	5	1	11	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0005	15	0	0	15	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0006	12	0	1	10	1	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0007	10	10	0	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0008	9	1	3	2	1	2	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0009	9	1	3	0	0	5	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0010	8	6	1	0	0	1	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0011	7	0	1	5	1	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0012	7	0	3	4	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0013	7	0	0	7	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0014	5	0	0	5	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0015	4	0	0	4	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0016	4	0	1	2	0	1	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0017	4	0	0	2	0	2	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0018	4	0	0	4	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0019	4	3	1	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0020	4	0	2	0	2	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0021	4	0	0	3	0	1	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0022	4	4	0	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0023	3	0	1	1	0	1	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0024	3	0	0	3	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0025	3	0	0	3	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0026	3	0	0	3	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0027	3	3	0	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0028	3	3	0	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0029	3	3	0	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0030	2	2	0	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0031	2	0	0	2	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0032	2	0	0	0	0	2	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0033	2	0	2	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0034	2	0	2	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0035	2	0	0	2	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0036	2	0	0	2	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0037	2	0	0	1	1	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0038	2	0	0	0	0	2	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0039	2	1	1	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0040	2	2	0	0	0	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0041	2	0	0	0	2	0	ZSCAN29	chr15	43353175	43376043
ZSCAN29_chr15_43353175_43376043	0/0	g0042	2	2	0	0	0	0	ZSCAN29	chr15	43353175	43376043