JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN2_chr15_84596009_84628716	0/0	g0259	1	0	0	1	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0260	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0261	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0262	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0263	1	0	1	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0264	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0265	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0266	1	0	0	1	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0267	1	0	0	1	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0268	1	0	0	1	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0269	1	0	0	1	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0270	1	0	0	1	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0271	1	0	0	1	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0272	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0273	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0274	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0275	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0276	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0277	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0278	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0279	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0280	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0281	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0282	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN2_chr15_84596009_84628716	0/0	g0283	1	1	0	0	0	0	ZSCAN2	chr15	84596009	84628716
ZSCAN30_chr18_35246062_35295229	0/0	g0001	11	0	1	9	0	1	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0002	8	0	4	0	2	2	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0003	8	0	1	7	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0004	6	0	3	1	0	2	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0005	6	0	0	6	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0006	5	5	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0007	4	4	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0008	3	0	1	0	0	2	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0009	3	0	0	3	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0010	3	0	0	3	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0011	3	1	2	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0012	3	3	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0013	3	0	0	3	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0014	3	0	3	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0015	3	0	0	3	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0016	2	0	0	2	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0017	2	0	0	2	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0018	2	0	0	2	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0019	2	0	0	2	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0020	2	0	2	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0021	2	0	1	0	0	1	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0022	2	0	0	2	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0023	2	2	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0024	2	0	1	0	1	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0025	2	0	0	0	2	0	ZSCAN30	chr18	35246062	35295229