JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN30_chr18_35246062_35295229	0/0	g0276	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0277	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0278	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0279	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0280	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0281	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0282	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0283	1	0	1	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0284	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0285	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0286	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0287	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0288	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0289	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0290	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0291	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0292	1	0	0	1	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0293	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0294	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0295	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0296	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0297	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0298	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0299	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN30_chr18_35246062_35295229	0/0	g0300	1	1	0	0	0	0	ZSCAN30	chr18	35246062	35295229
ZSCAN31_chr6_28319737_28341148	1/0	g0001	95	2	21	48	3	20	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0002	71	5	10	52	0	4	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0003	37	7	7	22	0	1	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0004	28	6	4	16	1	1	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0005	17	8	3	0	3	3	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0006	17	0	1	13	1	2	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0007	10	9	1	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/1	g0008	9	1	1	4	1	1	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0009	8	6	2	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0010	8	0	2	5	0	1	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0011	7	7	0	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0012	5	5	0	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0013	5	0	4	0	1	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0014	5	4	1	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0015	5	0	0	5	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0016	4	4	0	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0017	4	0	1	0	3	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0018	3	1	2	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0019	3	0	0	3	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0020	3	1	0	0	0	2	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0021	3	3	0	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0022	3	0	2	0	0	1	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0023	2	0	0	2	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0024	2	2	0	0	0	0	ZSCAN31	chr6	28319737	28341148
ZSCAN31_chr6_28319737_28341148	0/0	g0025	2	1	1	0	0	0	ZSCAN31	chr6	28319737	28341148