Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN32_chr16_3377085_3406004	0/0	g0251	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0252	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0253	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0254	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0255	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0256	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0257	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0258	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0259	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0260	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0261	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0262	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0263	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0264	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0265	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0266	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0267	1	0	0	1	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0268	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0269	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0270	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0271	1	0	1	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0272	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0273	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0274	1	0	1	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0275	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0276	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0277	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0278	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0279	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0280	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0281	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0282	1	1	0	0	0	0	ZSCAN32	chr16	3377085	3406004
ZSCAN32_chr16_3377085_3406004	0/0	g0283	1	0	0	0	0	1	ZSCAN32	chr16	3377085	3406004
ZSCAN4_chr19_57663935_57684152	1/1	g0001	57	1	14	33	0	7	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0002	26	2	6	14	1	3	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0003	21	2	3	12	4	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0004	21	1	0	18	0	2	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0005	19	0	3	15	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0006	13	0	5	5	3	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0007	10	1	3	6	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0008	10	4	1	5	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0009	9	0	1	8	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0010	8	1	0	6	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0011	7	0	6	0	1	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0012	6	0	2	3	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0013	6	0	1	5	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0014	6	0	2	4	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0015	6	6	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0016	5	0	4	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0017	5	0	1	4	0	0	ZSCAN4	chr19	57663935	57684152