Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN4_chr19_57663935_57684152	0/0	g0018	5	4	0	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0019	4	0	0	4	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0020	4	0	2	2	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0021	4	0	3	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0022	3	0	2	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0023	3	0	0	2	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0024	3	1	1	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0025	3	3	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0026	3	3	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0027	3	3	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0028	3	3	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0029	3	3	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0030	3	0	1	0	2	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0031	2	0	0	1	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0032	2	0	0	1	1	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0033	2	0	0	2	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0034	2	0	1	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0035	2	0	0	0	0	2	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0036	2	0	0	0	0	2	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0037	2	2	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0038	2	0	0	2	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0039	2	2	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0040	2	2	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0041	2	2	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0042	2	2	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0043	2	2	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0044	2	0	0	2	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0045	2	0	2	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0046	2	2	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0047	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0048	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0049	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0050	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0051	1	0	0	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0052	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0053	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0054	1	0	0	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0055	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0056	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0057	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0058	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0059	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0060	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0061	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0062	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0063	1	0	0	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0064	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0065	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0066	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0067	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152