Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN4_chr19_57663935_57684152	0/0	g0118	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0119	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0120	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0121	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0122	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0123	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0124	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0125	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0126	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0127	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0128	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0129	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0130	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0131	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0132	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0133	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0134	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0135	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0136	1	0	0	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0137	1	0	0	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0138	1	0	0	0	0	1	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0139	1	0	0	0	1	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0140	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0141	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0142	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0143	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0144	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0145	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0146	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0147	1	0	0	1	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0148	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0149	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0150	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0151	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0152	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0153	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0154	1	0	1	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0155	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0156	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0157	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0158	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0159	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0160	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN4_chr19_57663935_57684152	0/0	g0161	1	1	0	0	0	0	ZSCAN4	chr19	57663935	57684152
ZSCAN5A_chr19_56216303_56319839	0/0	g0001	2	0	2	0	0	0	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	g0002	2	0	0	0	0	2	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	g0003	1	1	0	0	0	0	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	g0004	1	1	0	0	0	0	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	g0005	1	0	0	1	0	0	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	g0006	1	0	0	1	0	0	ZSCAN5A	chr19	56216303	56319839