Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN5A_chr19_56216303_56319839	0/0	g0357	1	0	0	0	0	1	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	g0358	1	1	0	0	0	0	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	g0359	1	0	1	0	0	0	ZSCAN5A	chr19	56216303	56319839
ZSCAN5A_chr19_56216303_56319839	0/0	g0360	1	0	0	1	0	0	ZSCAN5A	chr19	56216303	56319839
ZSCAN5B_chr19_56184686_56202783	0/1	g0001	53	1	8	36	1	6	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0002	38	1	8	21	6	2	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0003	28	1	7	20	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0004	28	0	5	17	2	4	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0005	21	7	8	2	1	3	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0006	13	12	1	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0007	12	0	9	0	1	2	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0008	11	0	0	11	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0009	10	1	6	3	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0010	9	0	0	9	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0011	8	0	0	8	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0012	7	0	1	6	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0013	6	5	1	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0014	5	0	0	5	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0015	5	0	0	5	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0016	5	5	0	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0017	4	0	0	4	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0018	4	0	4	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0019	4	0	0	0	0	4	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0020	4	2	0	0	2	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0021	4	0	0	2	1	1	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0022	4	0	1	3	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0023	4	0	0	4	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0024	4	0	1	0	1	2	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0025	3	3	0	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0026	3	0	0	3	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0027	3	3	0	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0028	3	0	0	3	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0029	3	0	0	3	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0030	3	0	0	3	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0031	3	3	0	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0032	3	0	0	3	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0033	2	0	0	2	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0034	2	2	0	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0035	2	0	0	1	0	1	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0036	2	0	0	0	0	2	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0037	2	0	0	1	0	1	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0038	2	0	1	1	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0039	2	2	0	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0040	2	2	0	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0041	2	2	0	0	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0042	2	0	1	0	0	1	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0043	2	0	0	2	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0044	2	0	0	2	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	0/0	g0045	2	0	1	1	0	0	ZSCAN5B	chr19	56184686	56202783
ZSCAN5B_chr19_56184686_56202783	1/0	g0046	2	0	0	1	0	0	ZSCAN5B	chr19	56184686	56202783