Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSCAN9_chr6_28220275_28238487	0/0	g0026	2	0	1	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0027	2	0	0	0	0	2	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0028	2	1	1	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0029	2	2	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0030	2	0	0	0	0	2	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0031	2	0	2	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0032	2	0	1	0	1	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0033	2	0	0	2	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0034	2	2	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0035	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0036	1	0	0	0	0	1	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0037	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0038	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0039	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0040	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0041	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0042	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0043	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0044	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0045	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0046	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0047	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0048	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0049	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0050	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0051	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0052	1	0	0	0	0	1	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0053	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0054	1	0	1	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0055	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0056	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0057	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0058	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0059	1	0	1	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0060	1	0	0	0	0	1	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0061	1	0	1	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0062	1	0	1	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0063	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0064	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0065	1	0	0	1	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0066	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0067	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0068	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0069	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSCAN9_chr6_28220275_28238487	0/0	g0070	1	1	0	0	0	0	ZSCAN9	chr6	28220275	28238487
ZSWIM1_chr20_45876227_45890266	0/1	g0001	203	39	45	96	6	16	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	1/0	g0002	180	50	17	83	8	21	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	g0003	5	0	1	3	0	1	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	g0004	3	0	0	3	0	0	ZSWIM1	chr20	45876227	45890266
ZSWIM1_chr20_45876227_45890266	0/0	g0005	3	1	0	2	0	0	ZSWIM1	chr20	45876227	45890266