Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	SAS	genename	chr	start	end
ZSWIM2_chr2_186822475_186854170	0/0	g0095	1	0	0	0	1	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0096	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0097	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0098	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0099	1	0	1	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0100	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0101	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0102	1	0	1	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0103	1	0	1	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0104	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0105	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0106	1	0	1	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0107	1	0	1	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0108	1	0	1	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0109	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0110	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0111	1	0	1	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0112	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0113	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0114	1	1	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0115	1	1	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0116	1	1	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0117	1	1	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0118	1	0	0	0	1	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0119	1	1	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0120	1	0	0	0	1	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0121	1	0	0	0	1	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0122	1	0	1	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0123	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0124	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0125	1	1	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0126	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	1/0	g0127	1	0	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0128	1	1	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0129	1	1	0	0	0	ZSWIM2	chr2	186822475	186854170
ZSWIM2_chr2_186822475_186854170	0/0	g0130	1	0	0	1	0	ZSWIM2	chr2	186822475	186854170
ZSWIM3_chr20_45852614_45884122	0/0	g0001	20	0	3	17	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0002	16	3	1	11	1	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0003	9	0	0	7	2	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0004	7	0	0	7	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0005	7	1	0	2	4	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/1	g0006	7	1	5	0	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0007	5	0	0	5	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0008	5	0	0	4	1	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0009	4	4	0	0	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0010	4	0	0	4	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0011	4	2	0	2	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0012	4	3	1	0	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0013	3	3	0	0	0	ZSWIM3	chr20	45852614	45884122
ZSWIM3_chr20_45852614_45884122	0/0	g0014	3	0	0	3	0	ZSWIM3	chr20	45852614	45884122