Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ghapid	total	AFR	AMR	EAS	EUR	SAS	genename	chr	start	end
ZSWIM5_chr1_45011399_45211605	0/0	g0199	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0200	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0201	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0202	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0203	1	0	0	0	0	1	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0204	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0205	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0206	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0207	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0208	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0209	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0210	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0211	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0212	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0213	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0214	1	0	0	0	1	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0215	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0216	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0217	1	0	0	0	1	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0218	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0219	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0220	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0221	1	0	1	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0222	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0223	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0224	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0225	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0226	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0227	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0228	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0229	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0230	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0231	1	1	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0232	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/0	g0233	1	0	0	1	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM5_chr1_45011399_45211605	0/1	g0234	1	0	0	0	0	0	ZSWIM5	chr1	45011399	45211605
ZSWIM6_chr5_61327258_61551172	0/0	g0001	2	0	0	0	0	2	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0002	1	0	1	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0003	1	0	1	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0004	1	0	1	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0005	1	0	1	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0006	1	1	0	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0007	1	1	0	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0008	1	0	0	0	0	1	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0009	1	0	0	0	0	1	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0010	1	0	1	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0011	1	0	1	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0012	1	0	1	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0013	1	1	0	0	0	0	ZSWIM6	chr5	61327258	61551172
ZSWIM6_chr5_61327258_61551172	0/0	g0014	1	1	0	0	0	0	ZSWIM6	chr5	61327258	61551172